PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29806.m000966
Common NameRCOM_0824380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 697aa    MW: 78966 Da    PI: 5.7506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29806.m000966genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05349372123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C++C+++F +k+++ +H+ + H
  29806.m000966 349 FECHKCNMTFDDKDTYLQHLLSfH 372
                    89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.709233305IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.18E-7239288IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.103.0E-5241288IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.683349377IPR007087Zinc finger, C2H2
SMARTSM003550.068349372IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280351372IPR007087Zinc finger, C2H2
SMARTSM003550.19396418IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954396423IPR007087Zinc finger, C2H2
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MATSTAQPPP LYLPFVDMTT LTQSELHALS LFSSSSLNPN NINIITPPIT IDRTLFNESA  60
GSRRQTYSRP SSHHHRHRLA GLLPKTTTQN PNFPSENPDT DRIENHAIIK FLKQLLSSHP  120
EFNQLDLIDF DSFTHLNDAI NFNNNNINNV QVKKRKRGRK AKLKVISVVE EREREIVNKN  180
GVVIDLVKLA SLEDPYREEL KRRTEGMVKE EELLGFFRDL GGQWCSRRRK RKIVDASEFG  240
DFLPFGWKLL LGLKRKEGKA WVYCRRYISP SGQQFISCKE VSAYLQSCLK PYDHSNGNNR  300
QVHRVASENH AGTSGREEDQ RQPSEHEKAV SLLGIDNLEL AEVQIQDLFE CHKCNMTFDD  360
KDTYLQHLLS FHQRTTRRYR LGSSVGDGVI VKDGKYECQF CHKVFHERRR YNGHVGIHVR  420
NYVRGIEESP STRMALQKRS ESPTKDELPA RISKMDALIE IAQNSIRETS SDRNGEPSGG  480
FSSDKPNMVP NQELLASVSD HELNSDSTLS EPDKEYDMID ESQELGLHQQ KTDDMIIDER  540
IEKIDGAGDV LNVMVDSSAE EQHGNTSEAF GGTDCPLVHT DEIVKSVIEQ ESGFELQSHD  600
RLQSLAPLDD HQVSRIDSNM NLVGTDNQDS YESIEVEFGF QSNNGIPDNK IVQETGQKSM  660
KKDELQDGMP ELPATLLQPS HDISAPNVSL DNVFTAS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29806.m000966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525855.30.0LOW QUALITY PROTEIN: uncharacterized protein LOC8276903
TrEMBLB9SIN60.0B9SIN6_RICCO; Uncharacterized protein
STRINGXP_002525855.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719