PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29811.m000540
Common NameRCOM_0834050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-other
Protein Properties Length: 643aa    MW: 72559.5 Da    PI: 9.4267
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29811.m000540genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.42.4e-1336107357
                    --SS--HHHHHHHHHHHH.................HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFe.................knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    kR   t+ q+ +Le++++                 +++yp++e++ e A+k+gLte+qV+ WF+ rR k+k+
  29811.m000540  36 KRILKTPAQIMALEKFYNvmlvimflkgkflafspEHNYPTEEMKSEVAEKIGLTEKQVSSWFCHRRLKDKN 107
                    788889999999999999999999999999999989*********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-2010107IPR009057Homeodomain-like
PROSITE profilePS5007113.45931108IPR001356Homeobox domain
SMARTSM003894.0E-1133112IPR001356Homeobox domain
SuperFamilySSF466891.88E-1135116IPR009057Homeodomain-like
PfamPF000468.8E-1136106IPR001356Homeobox domain
CDDcd000862.69E-1236109No hitNo description
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MACGILDLVH LSQAPSLDSN EMHSEENRVS FEKNTKRILK TPAQIMALEK FYNVMLVIMF  60
LKGKFLAFSP EHNYPTEEMK SEVAEKIGLT EKQVSSWFCH RRLKDKNKSK DETYGNGRQD  120
RSSGIIQDRG SGLRQDSCGS TKQGDYRKVD LKEVESQRLY GHNFPAADLT YDRTSRYTGN  180
LNAMDDTSSE SSSSLQEKLF SQSEDLYDMK TSGYVTQNGA NRPFVPKVSN NMGYKPSGYL  240
KVKNEIENAA ITAVKRQLGK HYREDGPPLG VEFQALPPGA FSSSSRDPIN GAFYVGDLAR  300
IHSPPDISGI HKQSSTSNRY ELYSSKMSSQ DTFMDGANCN LKNTSDSLDK KSHHQLKRKS  360
TFNHPDSSPG GKSAMDKFDG FAAETSMHSS KRNYKMGFKH NAEGIRSDIG SNHHYLDGGK  420
VISEQTGRWL HDYGNGGPKI VQGNDFMSKP NLILGSSKFH DKEERTQSTR PAKEEKLFGE  480
MKGTKEYRDS VRGMNHPANE MKVSKRFRDE FCQQEYVTKA SFPNIARKTN SNKGLVGFSL  540
GLAALRTSVP ESLQHSPLFG DERRVGKRCH HIEPHIFLLH TIWETWDYLE NVAACSIFLD  600
AAKFVNAQHA KIRVLSWRGH LVSARMKLQT LVHQTEDLTV DRW
Cis-element ? help Back to Top
SourceLink
PlantRegMap29811.m000540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579590.10.0homeobox-DDT domain protein RLT1 isoform X2
RefseqXP_025014515.10.0homeobox-DDT domain protein RLT1 isoform X1
TrEMBLB9SM270.0B9SM27_RICCO; Uncharacterized protein
STRINGXP_002527046.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-81HB-other family protein