PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29813.m001543
Common NameRCOM_0837860
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 395aa    MW: 44355.8 Da    PI: 4.5397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29813.m001543genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-194392255
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  29813.m001543 43 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 92
                   79*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.66E-324299No hitNo description
PfamPF008471.8E-144392IPR001471AP2/ERF domain
PROSITE profilePS5103219.95443100IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1943101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-284399IPR001471AP2/ERF domain
SMARTSM003807.8E-3743106IPR001471AP2/ERF domain
PRINTSPR003673.8E-84455IPR001471AP2/ERF domain
PRINTSPR003673.8E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRKRKASESV GEEDYKDLRS CMAWDQVMEE AATLVGPWRA RKRYVGVRQR PSGRWVAEIK  60
DTIQKIRVWL GTYDTAEEAA RAYDEAACLL RGANTRTNFW PSSPSSHSKP ALSPKITNLL  120
LNRLKQRNDN VSDHTTISDA AAATLPAAFS HKEQQTGEVE EAQFVSLFEV PEDCNIIENS  180
NAGASANSAI TTSDRYITTG CYGSNFFKTE GDDWSINVDG NNQYEGEKVE EEIDMRMVDF  240
QFDDLIGGSS SSYCSPFDIA EEMMESIVEQ QQEYYHEDHE DHDQSTLREI MKRMNYERQF  300
SASLYAYSGV SECLRLTFGS SSRLMAKTKN NINEENMKDD DHNKTKELKN WIPQPPTEVG  360
SSSSSSSSSS SSSNKEGGEL SFCSSLDLPS ICFTV
Cis-element ? help Back to Top
SourceLink
PlantRegMap29813.m001543
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522489.30.0ethylene-responsive transcription factor RAP2-11
TrEMBLB9S9200.0B9S920_RICCO; Uncharacterized protein
STRINGXP_002522489.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-18related to AP2 11