PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29814.m000742

Common Name

LOC8265382, RCOM_0839580

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 176aa MW: 19514.2 Da PI: 8.3622

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29814.m000742	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.7	1.3e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la 29814.m000742 11 SCAACKFLKRRCIPNCIFAPYFRSDEPKKFARVHKIFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQVDLAI 106 6**********************************************************************************************9 PP DUF260 97 lkee 100 +k++ 29814.m000742 107 AKAR 110 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.595	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MRSNEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDEPKKF ARVHKIFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QVDLAIAKAR LARYTAISSS 120 FSSASTASIL SDRSSLAAFN EFPACGGMVV DSFSQTSSEL SQDRVVNDFS QFPYIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	6	114	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29814.m000742

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002528321.1	1e-126	LOB domain-containing protein 21
Swissprot	Q9SRL8	4e-64	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	B9SQQ2	1e-124	B9SQQ2_RICCO; LOB domain-containing protein, putative
STRING	XP_002528321.1	1e-125	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-61	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	29814.m000742
Entrez Gene	8265382

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]