PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29815.m000499
Common NameLOC8274879, RCOM_0840490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25850.1 Da    PI: 8.3836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29815.m000499genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1961114356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  29815.m000499  61 KKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 114
                    56779************************************************9 PP
2HD-ZIP_I/II117.76.5e-3860151192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++L++ev +L++ l+
  29815.m000499  60 EKKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKEEFDVVSKEKQNLQEEVMKLKAILR 151
                    69*************************************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1954118IPR009057Homeodomain-like
PROSITE profilePS5007117.24856116IPR001356Homeobox domain
SMARTSM003894.1E-1759120IPR001356Homeobox domain
CDDcd000864.84E-1661117No hitNo description
PfamPF000469.0E-1761114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-2066115IPR009057Homeodomain-like
PRINTSPR000313.8E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000313.8E-596112IPR000047Helix-turn-helix motif
PfamPF021839.2E-8116150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDWHGNLRTF VSRPETSFNF LYNYNYDQYN PGMDVKHAAI AETPHGLIPT MDKISFGSQE  60
KKKRLTSDQL ESLERSFQEE IKLDPDRKMK LSRELGLQPR QIAVWFQNRR ARWKAKQLER  120
LYDSLKEEFD VVSKEKQNLQ EEVMKLKAIL RQEKATRNQV STGYTEISGE ETVESTSVAI  180
RSSGGKPRGG SSHHQIAECN YLLNVDEYNP VSSPYWAVIP SYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29815.m000499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528635.11e-168putative homeobox-leucine zipper protein ATHB-51 isoform X1
SwissprotQ9LZR01e-57ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLB9SRL61e-166B9SRL6_RICCO; Homeobox protein, putative
STRINGXP_002528635.11e-167(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.19e-60homeobox 51
Publications ? help Back to Top
  1. Zhao JL, et al.
    Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus.
    J Integr Plant Biol, 2015. 57(11): p. 925-35
    [PMID:25735194]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]