PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29815.m000502
Common NameLOC8274882, RCOM_0840720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 499aa    MW: 57039 Da    PI: 6.3584
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29815.m000502genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.64e-24115217186
       trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                    +Wt+++v++Li a+ +++++ +++                 +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ 
  29815.m000502 115 KWTDSMVRLLIMAVFYIGDEAGSEGnndpstgkkkaggglsQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQ 210
                    7**************88777775322556666677888888**********************************************559****** PP

       trihelix  80 pyfdqle 86 
                    ++++ ++
  29815.m000502 211 SLLETMD 217
                    *999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-22113242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MVHNGLPGGI FSGMGSGLLG LEMPLHQQQQ QQQQNPQNPQ NTHQIHHPQM VAYAHNHESD  60
HNPQSQQSVK HAYNPYSSLN PKPQSPLSDE DEPGFTGDDS TGDGKRKVSP WQRMKWTDSM  120
VRLLIMAVFY IGDEAGSEGN NDPSTGKKKA GGGLSQKKGK WKSVSRAMME KGFYVSPQQC  180
EDKFNDLNKR YKRVNDILGK GTACKVVENQ SLLETMDLSP KMKEEVKKLL NSKHLFFREM  240
CAYHNSCGHG SNGIASGTNH SPEIATDQSH PQHQQASHLQ QQRCSHSTEN AQFATISRTE  300
AEGSKMAKRI RNEEDDEEDY DESDEDEDED EDDEDEAIEG TSRSQNRHGH EDEEDHEEKP  360
AQKRQRTGVH SLSSSLMQQL NSELMGVIQD GAKSPWEKKH WMKLRSMQLE EQQLSYQCQA  420
FELEKQRLKW VKFSSKKERE MEKAKLDNDR RMLESERMVL LIRQKELELL DLQQQQHHHH  480
HQQQQLSSNK RGDPSSITG
Cis-element ? help Back to Top
SourceLink
PlantRegMap29815.m000502
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754483e-72HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528638.10.0uncharacterized protein LOC8274882
TrEMBLB9SRL90.0B9SRL9_RICCO; Uncharacterized protein
STRINGXP_002528638.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-77sequence-specific DNA binding transcription factors