PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29815.m000504
Common NameRCOM_0840950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 554aa    MW: 60952.3 Da    PI: 7.1413
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29815.m000504genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.9e-18170256186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +L++a++e+ ++l+rg+l++ +Weev+  +  r ++ +++ +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  29815.m000504 170 EWSDAAIECLLDAYTEKFTQLNRGNLRGRDWEEVAVIVseRCQKQSKTVEQCKNKVDNLKKRYKLERHRMSNG-GLSVSHWPWFKKME 256
                    5*************************************66666778899**********************98.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-21168258No hitNo description
Gene3DG3DSA:3.40.1160.105.8E-73300547IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.351313548IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.23E-58314547IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.23E-123316548No hitNo description
PfamPF006969.5E-25317527IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MCSLWSHPRA TSXXXXXXXX XXXXXXXXHH NHHQTNPNHQ HHHHHILHHH QPYAPHRFPA  60
KSPPIHAAPQ SILPSAIADG STTGGVEEPE EEEEEEEDNE SDSPFPEVNP FSDNNSNVRT  120
TATTTTEKRR ETTEDKNNSD GCNNNPYSNS YKKARQATAS SSEYRKDREE WSDAAIECLL  180
DAYTEKFTQL NRGNLRGRDW EEVAVIVSER CQKQSKTVEQ CKNKVDNLKK RYKLERHRMS  240
NGGLSVSHWP WFKKMEEIVG NSLPVKVVHD DFKGLGAGAA SGTGVGQSKR YATATASPVS  300
QTNAMKSKSI SNARWRRVVL KISGVALAGT GPNNIDPKVM MMIAREVAIA CHLGVEVAIV  360
IGGRNFFCGD TWVTATGLDR RTAYQIGMMA SVMNSVLLQS AIEKAGVKTR VQTAFAMQEV  420
AEPYNRQRAI RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA LQASEIHAEA VLKGTNVDGV  480
YDCHSRDNGV TFEHISFRDL VSRGATSMDM MALTCCEENG IPVVVFNLLE PGNISKALCG  540
EQVGTLIDQT GSLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-623075471239Uridylate kinase
3ek5_B7e-623075471239Uridylate kinase
3ek5_C7e-623075471239Uridylate kinase
3ek5_D7e-623075471239Uridylate kinase
3ek5_E7e-623075471239Uridylate kinase
3ek5_F7e-623075471239Uridylate kinase
3ek6_A7e-623075471239Uridylate kinase
3ek6_B7e-623075471239Uridylate kinase
3ek6_C7e-623075471239Uridylate kinase
3ek6_D7e-623075471239Uridylate kinase
3ek6_E7e-623075471239Uridylate kinase
3ek6_F7e-623075471239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29815.m000504
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580529.10.0uncharacterized protein LOC8274884, partial
TrEMBLB9SRM10.0B9SRM1_RICCO; Transcription factor, putative
STRINGXP_002528640.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein