PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29816.m000664
Common NameRCOM_0842100
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 207aa    MW: 23122.8 Da    PI: 7.3447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29816.m000664genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
    29816.m000664 13 KGAWSNQEDQKLIDYIRKHGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23463IPR009057Homeodomain-like
PROSITE profilePS5129422.746864IPR017930Myb domain
SMARTSM007175.1E-131262IPR001005SANT/Myb domain
PfamPF002492.4E-151360IPR001005SANT/Myb domain
SuperFamilySSF466892.96E-211487IPR009057Homeodomain-like
CDDcd001677.50E-111560No hitNo description
Gene3DG3DSA:1.10.10.602.0E-76487IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRKPCCEKQD TNKGAWSNQE DQKLIDYIRK HGEGCWRTLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRKLI NMGIDPNNHR LNQNLPRTQK TQDSASATSS  120
GTKSESTKQE LAAEPGRNNN NNEQASDEGS ILEDDPNGLL PDLNLDLTIN IPSSSAVNFK  180
EKQKSNQSNL SKEPEVAAAS PTLLLFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-141087480B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29816.m000664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578968.11e-145myb-related protein 308
SwissprotP813932e-56MYB08_ANTMA; Myb-related protein 308
TrEMBLB9SJ361e-150B9SJ36_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002526005.11e-151(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-54myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]