PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29820.m001008
Common NameLOC8263120, RCOM_0848300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 486aa    MW: 55209.9 Da    PI: 5.5854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29820.m001008genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.78.8e-1673134255
            AP2   2 gykGVrwdkkrgrWvAeIrdpse......ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr++  +g+WvAeIr+p        n+   +  r++lg+f ta eAa a+++a+++++g
  29820.m001008  73 RYRGVRQRI-WGKWVAEIREPAGkksvlmNNktGNrNRHWLGTFSTAIEAAVAYDNAARAIYG 134
                    59****998.**********7665788876677446***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6873142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-2873143IPR001471AP2/ERF domain
PfamPF008473.1E-973134IPR001471AP2/ERF domain
CDDcd000186.90E-2873143No hitNo description
SuperFamilySSF541713.47E-1773143IPR016177DNA-binding domain
SMARTSM003808.4E-3373148IPR001471AP2/ERF domain
PRINTSPR003671.7E-107485IPR001471AP2/ERF domain
PRINTSPR003671.7E-10124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSGMGDTKKE SSSSGISRKS KKNSRKSGSE SLEDTVTKWK TQNQLDEFRK PPSKGSRKGC  60
MPGKGGPENQ SYRYRGVRQR IWGKWVAEIR EPAGKKSVLM NNKTGNRNRH WLGTFSTAIE  120
AAVAYDNAAR AIYGPNAILN FPDYSSETSS TQFKTTLGSS EDDHTEKSRL NLLSTLQKTQ  180
CSVVREFKEE SEKLGSSGIS VIEESNEKPE NSQVAESILE EFKDKESILK PLYRYSNDAK  240
VEETLLVKKI NPEFADNMKY PENYGINGRH DCLQGKTKNM KAELSTDYEH CNEDEVMAPI  300
IKHVEEEEAG RRKESRQLGL SNTNMHESFN DSSGRDCELR TDYKSFNDSQ IPMKRKVIEG  360
EFPGMGSQFE ARPDDLSNNS MDTECYREID FKPSIQIGET DHSAREVKMN YGHYHLASTN  420
YQESNRSAHL TFQWQNPRDD QSGSSNHTVE TIRTEDIDFN LLGPDFNWGS VEELGGIEQW  480
FPEFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1574142360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309316GRRKESRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29820.m001008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526680.10.0uncharacterized protein LOC8263120
TrEMBLB9SL110.0B9SL11_RICCO; Uncharacterized protein
STRINGXP_002526680.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-35ERF family protein