PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29822.m003350
Common NameLOC8269319, RCOM_0850840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24384.5 Da    PI: 5.5203
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29822.m003350genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2069122356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t+eq++ Le+ Fe+++++  e++++LAkklg++ rqV vWFqNrRa++k
  29822.m003350  69 KKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGMQPRQVAVWFQNRRARWK 122
                    56789************************************************9 PP
2HD-ZIP_I/II132.71.3e-4268159192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl++eqv+lLE+sFeee+kLeperK++la++Lg+qprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++  ke+++L++e+ 
  29822.m003350  68 EKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGMQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSDFDNTVKENQKLKSEVV 159
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-2056126IPR009057Homeodomain-like
PROSITE profilePS5007117.96164124IPR001356Homeobox domain
SMARTSM003892.5E-1967128IPR001356Homeobox domain
CDDcd000864.22E-1769125No hitNo description
PfamPF000469.1E-1869122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-2270131IPR009057Homeodomain-like
PRINTSPR000315.7E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000315.7E-6104120IPR000047Helix-turn-helix motif
PfamPF021831.3E-19124166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDQSGRLLFN PSASSCHGGN MLFLGNCDSV FRGPRSMFKM EDTSKKRPFF SSPEDFFDDE  60
YYDEQLPEKK RRLTSEQVNL LEKSFEEENK LEPERKTQLA KKLGMQPRQV AVWFQNRRAR  120
WKTKQLERDY DVLKASYDSL LSDFDNTVKE NQKLKSEVVS LTEKLQTKEL TGATIPGQEP  180
ESLPAVTANA SAFELNVKLR TGSALEALEV QW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29822.m003350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573608.11e-156homeobox-leucine zipper protein HAT5
SwissprotQ022835e-82HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLB9RUU71e-154B9RUU7_RICCO; Homeobox protein, putative
STRINGXP_002517348.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-78homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]