PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29825.m000322

Common Name

RCOM_0859200

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 334aa MW: 37219.6 Da PI: 6.3519

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29825.m000322	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.7e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl 29825.m000322 14 KGPWSPEEDAKLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-21	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.467	9	66	IPR017930	Myb domain
SMART	SM00717	3.9E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-15	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.99E-18	15	90	IPR009057	Homeodomain-like
CDD	cd00167	2.94E-9	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-5	66	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGA FSEEEDNIIC SLYISIGSRL KKKLLGKQRK EQQARRASLR QAIKRESQSF 120 ISPVVMNQQT PYWPELPPPS TTIMPVMTNP THDSHFLDQE SLKSLLIKLG GRFSDDRNNQ 180 ESHMTNTFYP LDGSCDTQDQ QYYANSMNML PSSSMNSTDS PCSQLPNTNY AVNGAAGTRM 240 FQGLDSFPVE LDELLVYDNN QQQVEGLESF YGMDMANNGS RNGASSGESS SCCWGNVSSS 300 VQGYPQLVSE FETCLQSLPQ DHSCFEVSGY LGSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29825.m000322

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015581737.1	0.0	transcription factor RAX3
Swissprot	Q9M2Y9	5e-62	RAX3_ARATH; Transcription factor RAX3
TrEMBL	B9SX81	0.0	B9SX81_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002530600.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-58	myb domain protein 84

Link Out ? help Back to Top
Phytozome	29825.m000322

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]