PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29827.m002550
Common NameRCOM_0865000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LSD
Protein Properties Length: 108aa    MW: 11227 Da    PI: 8.3257
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29827.m002550genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.51.1e-132953125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr+lL YP GA+sV+C++C++V
  29827.m002550 29 CSGCRNLLLYPVGATSVCCSVCNAV 53
                   ************************9 PP
2zf-LSD142.51e-136892125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg+Cr lL+Y +GA+sV+Ca+C++V
  29827.m002550 68 CGNCRMLLMYQYGARSVKCAVCNFV 92
                   ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.6E-132656IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.4E-126595IPR005735Zinc finger, LSD1-type
PfamPF069436.3E-136892IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPHTPPAA NGVQSQLVCS GCRNLLLYPV GATSVCCSVC NAVTIVPPPA  60
NQVAHVNCGN CRMLLMYQYG ARSVKCAVCN FVTSVGASTS TTDQKFNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29827.m002550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-32AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109937.14e-56protein LOL1 isoform X1
RefseqXP_028109938.14e-56protein LOL1 isoform X1
RefseqXP_028109939.14e-56protein LOL1 isoform X1
SwissprotQ93ZB12e-44LOL1_ARATH; Protein LOL1
TrEMBLB9S1H16e-71B9S1H1_RICCO; Uncharacterized protein
STRINGXP_002519836.11e-71(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-45lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]