PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29827.m002555
Common NameLOC8284623, RCOM_0865060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 366aa    MW: 41307.7 Da    PI: 4.7041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29827.m002555genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.7e-5361331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yL++kv++ ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++
  29827.m002555   6 LPPGFRFHPTDEELVGYYLHRKVQKLEIEL-EVIPVIDLYKFDPWELPeKsFLPQRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC 100
                    79****************************.99**************95344556788************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++l+g +ktLvfy+grap g +tdWvmheyrl
  29827.m002555 101 -QSALTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-614156IPR003441NAC domain
PROSITE profilePS5100557.736156IPR003441NAC domain
PfamPF023653.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVQK LEIELEVIPV IDLYKFDPWE LPEKSFLPQR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSALTGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDGSQG SSNFQGAFAL CRVVKKNEQA HKTNDSNGEP KATVVGGSSS  180
NADFTSTVIS NGQWSISNDI SSQPSYLYNE SHHSSPIASP YQVTPMSECE PRSTESNPSS  240
LWVSPDLILD SSKNYPQVSQ YFPLYEYPSS MTTWQPQEDR EFSSSSLYPN FTGDIEPVDD  300
LSRIGCMSPY SAGHGNYMDL SGNEDMPYEG CEPWDQAPIC RQTSGDGSFG EYGGLWSQED  360
NMVIVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53516216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-53516216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-53516216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-53516216171NO APICAL MERISTEM PROTEIN
3swm_A2e-53516219174NAC domain-containing protein 19
3swm_B2e-53516219174NAC domain-containing protein 19
3swm_C2e-53516219174NAC domain-containing protein 19
3swm_D2e-53516219174NAC domain-containing protein 19
3swp_A2e-53516219174NAC domain-containing protein 19
3swp_B2e-53516219174NAC domain-containing protein 19
3swp_C2e-53516219174NAC domain-containing protein 19
3swp_D2e-53516219174NAC domain-containing protein 19
4dul_A2e-53516216171NAC domain-containing protein 19
4dul_B2e-53516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29827.m002555
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519841.10.0NAC domain-containing protein 71
SwissprotO496971e-104NAC71_ARATH; NAC domain-containing protein 71
TrEMBLB9S1H60.0B9S1H6_RICCO; Transcription factor, putative
STRINGXP_002519841.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-106NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]