PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29827.m002636

Common Name

RCOM_0867240

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

BES1

Protein Properties

Length: 668aa MW: 75470.6 Da PI: 6.0943

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29827.m002636	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	153.8	1.2e-47	70	211	2	143
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqss 97 g g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve DGttyr++ p + gs+ +s+es+++++ 29827.m002636 70 GRGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVESDGTTYRQSPAPS----QLGSFGVRSVESPVSTA 161 7899***************************************************************888887....89999999999999988 PP DUF822 98 lkssalaspvesysaspksssfpspssldsislasa....asllpvlsvl 143 + al+ ++++++++ ++++sp slds+ +++ ++ p++sv+ 29827.m002636 162 KAAAALECHNHHQQSVLRIDESLSPPSLDSVVMTEGdtrtDKFAPLTSVD 211 9999*************************9988765555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.4E-48	70	213	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	4.45E-154	232	664	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	5.4E-169	233	666	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.4E-79	258	626	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	271	285	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	292	310	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	314	335	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	407	429	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	480	499	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	514	530	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	531	542	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	549	572	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.5E-52	587	609	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MTSNSNQDVL LDPQIDHYSQ TQSQPQPHPV QSNSHHIQPQ PRRPRGFAAT AAAAAAATDP 60 TNTTAVNVSG RGKREREKEK ERTKLRERHR RAITSRMLAG LRQYGNFPLP ARADMNDVLA 120 ALAREAGWTV ESDGTTYRQS PAPSQLGSFG VRSVESPVST AKAAAALECH NHHQQSVLRI 180 DESLSPPSLD SVVMTEGDTR TDKFAPLTSV DSLDADQLIQ DVRSGEHEGD FTSTSYVPVY 240 VMLATGFINN FCQLVDPQGV RQELSHIKSL DVDGVVVECW WGIVEAWGPQ KYVWSGYREL 300 FNIIREFKLK LQVVMAFYEY QGSDSEEVLI SLPQWVLEIG KENQDIFFTD REGRRNTECL 360 SWGIDKERVL KGRTGIEVYF DFMRSFRVEF DDLFAEGIIS AVEIGLGASG ELKYPCFPER 420 MGWRYPGIGE FQCYDKYLQQ NLRSAAQSRG HPFWARGPDN AGQYNSRPHE TGFFCERGDY 480 DSYFGRFFLH WYARTLIDHA DNVLSLASLT FEDTRIIVKI PAVYWWYKTS SHAAELTAGY 540 HNPTNQDGYS PVFEALKKHS VTVKFVCSGL QVSAHENDEV LADPEGLSWQ VLNSAWDRGL 600 TVAGVNVLSC YDREGCMRVV EMAKPRCNPD HRQFAFFVYQ QPSPLVPGTL CFTELDYFIK 660 CMHGKNKP

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MTSNSNQDVL LDPQIDHYSQ TQSQPQPHPV QSNSHHIQPQ PRRPRGFAAT AAAAAAATDP  60
TNTTAVNVSG RGKREREKEK ERTKLRERHR RAITSRMLAG LRQYGNFPLP ARADMNDVLA  120
ALAREAGWTV ESDGTTYRQS PAPSQLGSFG VRSVESPVST AKAAAALECH NHHQQSVLRI  180
DESLSPPSLD SVVMTEGDTR TDKFAPLTSV DSLDADQLIQ DVRSGEHEGD FTSTSYVPVY  240
VMLATGFINN FCQLVDPQGV RQELSHIKSL DVDGVVVECW WGIVEAWGPQ KYVWSGYREL  300
FNIIREFKLK LQVVMAFYEY QGSDSEEVLI SLPQWVLEIG KENQDIFFTD REGRRNTECL  360
SWGIDKERVL KGRTGIEVYF DFMRSFRVEF DDLFAEGIIS AVEIGLGASG ELKYPCFPER  420
MGWRYPGIGE FQCYDKYLQQ NLRSAAQSRG HPFWARGPDN AGQYNSRPHE TGFFCERGDY  480
DSYFGRFFLH WYARTLIDHA DNVLSLASLT FEDTRIIVKI PAVYWWYKTS SHAAELTAGY  540
HNPTNQDGYS PVFEALKKHS VTVKFVCSGL QVSAHENDEV LADPEGLSWQ VLNSAWDRGL  600
TVAGVNVLSC YDREGCMRVV EMAKPRCNPD HRQFAFFVYQ QPSPLVPGTL CFTELDYFIK  660
CMHGKNKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-121	235	626	10	401	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29827.m002636

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519919.2	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	B9S1Q4	0.0	B9S1Q4_RICCO; Beta-amylase
STRING	XP_002519919.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	29827.m002636

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]