PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29830.m001415

Common Name

LOC8268741, RCOM_0872210

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 187aa MW: 21784.9 Da PI: 9.7293

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29830.m001415	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.1	3e-48	5	132	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPt+eel+++yLkk + gk+l+ ++i+ +diy++ePwdLp ++ +e+ewyfF++r++k+++g r+nr+t++gyWkatg+d+++ + 29830.m001415 5 LPGFRFHPTEEELLDFYLKKIALGKQLHS-DIISFLDIYHHEPWDLPGLARIGEREWYFFVPRERKNRHGGRPNRTTAKGYWKATGSDRPIRCLtd 99 59**********************999.99***********8778899*********************************98766 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l gl+ktLvfy+grapkg+ktdWvm+eyrl 29830.m001415 100 PKRLLGLRKTLVFYTGRAPKGQKTDWVMNEYRL 132 7788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.255	4	151	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-57	5	151	IPR003441	NAC domain
Pfam	PF02365	3.6E-25	6	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGFQLPGFRF HPTEEELLDF YLKKIALGKQ LHSDIISFLD IYHHEPWDLP GLARIGEREW 60 YFFVPRERKN RHGGRPNRTT AKGYWKATGS DRPIRCLTDP KRLLGLRKTL VFYTGRAPKG 120 QKTDWVMNEY RLPNTCSLLK DDIVLCKIYR KATPLKVLEE RAALEEVTRA SQVASSFPLK 180 EEAXCQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-50	6	151	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29830.m001415

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521686.1	1e-137	NAC domain-containing protein 22
Swissprot	Q10S65	4e-86	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	B9S6R7	1e-136	B9S6R7_RICCO; NAC domain-containing protein, putative
STRING	XP_002521686.1	1e-137	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-89	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	29830.m001415
Entrez Gene	8268741

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]