PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29830.m001437

Common Name

LOC8268763, RCOM_0873830

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 256aa MW: 28275.5 Da PI: 6.7986

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29830.m001437	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	114	135	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C + F++ + L H+r+H 29830.m001437 114 TCAVCERKFPTIYALFGHLRMH 135 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	115	135	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MENPSDPKLE SSSPQQQPQG KNNPQNDANE NISGRSLPPN AMPISRLEVT TPTQFTIDTA 60 PRPSAHIRVR AGTKNGGGVN AGADKGFRKK RGRSLSYDGD VRPKRRADTG LPSTCAVCER 120 KFPTIYALFG HLRMHNKRDW RGAFPPPVYN PDWVENGGSN VDQSLQQPAA TQQVEEKEVI 180 PELLDVAQEI LKKMQQENIS NVTDPIKKLE FDLNLLPQEN SSGPSSNMAS SQEKIATRFD 240 LNFPPPKEDN DDPPAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29830.m001437

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521708.1	0.0	uncharacterized protein LOC8268763
TrEMBL	B9S6T9	0.0	B9S6T9_RICCO; Uncharacterized protein
STRING	XP_002521708.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF26969	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	3e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	29830.m001437
Entrez Gene	8268763