PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29830.m001444

Common Name

RCOM_0874100

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Nin-like

Protein Properties

Length: 223aa MW: 26230.4 Da PI: 10.6742

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29830.m001444	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	101	150	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl 29830.m001444 101 ARIALEDLVKYFDLPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSL 150 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.713	87	170	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	103	150	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MFRNPKLKSI PTLANDLQLI FKLSCRTADE ESLQFFFQGK CKRDRGDCYQ SKRSLPVLDQ 60 DLNCLPYSGP TSELSRKQQI ELRDPGRAAK KKKRAATEDI ARIALEDLVK YFDLPIVEAS 120 RNLKVGLTVL KRKCREFGIP RWPHRKIKSL DSLIRNLQEE AERQKQENED AAMAVAKRQR 180 MLEREKETIE RKPFMEIQSE TKRFRQDVFK RRHRARALKN QGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29830.m001444

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521715.2	1e-162	protein RKD5
Swissprot	O81791	4e-68	RKD5_ARATH; Protein RKD5
TrEMBL	B9S6U6	1e-161	B9S6U6_RICCO; Transcription factor, putative
STRING	XP_002521715.1	1e-162	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-66	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	29830.m001444

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]