PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001714
Common NameRCOM_0886560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 309aa    MW: 35556.5 Da    PI: 6.9492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001714genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.92.3e-37191521128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    +p+G+rF P+deelv +yLk+kveg +l+l   +++vdiyk++P++L  k++  +e+ewyfF++r++ ++ g+r++r++++gyWk tg++ke+ + 
  29838.m001714  19 MPVGYRFMPNDEELV-NYLKHKVEGFPLPL-GLVHDVDIYKFHPHELTGKYELiGEREWYFFTPRNRISPDGSRPSRKASNGYWKPTGSEKEIPN- 111
                    699************.9*************.89**************9544333899*************************************9. PP

            NAM  96 kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                    +++ vg++ +L +y        k ++++g++tdW mhey +
  29838.m001714 112 EKSPVGVRMSLDYYefsnteiqKRKQSSGTRTDWKMHEYIV 152
                    999***********88888886679999***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-4417177IPR003441NAC domain
PROSITE profilePS5100540.46419177IPR003441NAC domain
PfamPF023653.8E-2120151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVAYENVSDN GIKGYFRGMP VGYRFMPNDE ELVNYLKHKV EGFPLPLGLV HDVDIYKFHP  60
HELTGKYELI GEREWYFFTP RNRISPDGSR PSRKASNGYW KPTGSEKEIP NEKSPVGVRM  120
SLDYYEFSNT EIQKRKQSSG TRTDWKMHEY IVKQYKDNGN DYRKKFHALA LCKIYKKKAK  180
NDEDEPAAGT SSSVPKNAPI QSQEPSSYGF QPISGFEEQA YWTQMMITAN NLLVPQGTTY  240
AELVNNKVTN VQPVSAQIVE DQRDNSCPDS QRQNDDSCPD NEHQNDDSGL YCIVHSSRSW  300
NKRLEKNPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-371917920170NAC domain-containing protein 19
3swm_B3e-371917920170NAC domain-containing protein 19
3swm_C3e-371917920170NAC domain-containing protein 19
3swm_D3e-371917920170NAC domain-containing protein 19
3swp_A3e-371917920170NAC domain-containing protein 19
3swp_B3e-371917920170NAC domain-containing protein 19
3swp_C3e-371917920170NAC domain-containing protein 19
3swp_D3e-371917920170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9S9K80.0B9S9K8_RICCO; NAC domain-containing protein, putative
STRINGXP_002522677.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.28e-39NAC family protein