PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001723
Common NameRCOM_0886650
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 313aa    MW: 35297.4 Da    PI: 4.8306
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001723genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16147183135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  29838.m001723 147 CQHCGTSEnaTPAMRRGPAGPRTLCNACGLMWANKGT 183
                    **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101712.75977119IPR010402CCT domain
PfamPF062035.0E-1577118IPR010402CCT domain
SuperFamilySSF577169.98E-12140192No hitNo description
SMARTSM004015.6E-9141194IPR000679Zinc finger, GATA-type
CDDcd002024.11E-15146190No hitNo description
Gene3DG3DSA:3.30.50.109.7E-15146188IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440147174IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14147183IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRAFFIQGGS VSVGSDKCKL CCYFWEGLIH LLLAFQVLNF WYNKMLIQIV TILLFPYCTF  60
QSLGDSDTSR ESKLSRRIAS LVRFREKRKE RCFEKKIRYT CRKEVAQRMH RKNGQFASLK  120
DCYSTGTGSN WEPSNTTPQS EPILHRCQHC GTSENATPAM RRGPAGPRTL CNACGLMWAN  180
KGTLRDLTKG GRHVSFDQNE LGTPDFKPST MEQENPYVNQ DEEGSPEESK PVLLDSENSM  240
RPNDQDLLET DDTVTDPLPT HVENSSVNLD DEDFQETLDG LGNVSGSEFE IPGNFDDQVD  300
IGDCNMGSEW SGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001723
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013767.10.0GATA transcription factor 19
SwissprotQ8GXL74e-46GAT24_ARATH; GATA transcription factor 24
TrEMBLB9S9L70.0B9S9L7_RICCO; Uncharacterized protein
STRINGXP_002522686.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.16e-39ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]