PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29841.m002790
Common NameLOC8271382, RCOM_0897650
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 320aa    MW: 36561.9 Da    PI: 5.776
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29841.m002790genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.55.1e-40641921128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    lppG++F+P+d el+v+yL++k+ +++l+  + i+e+++yk++P++L +    + +++++ewyfFs+rd+ky++g+r +r  k gyWk+tg  k+v
  29841.m002790  64 LPPGYKFKPSDGELIVHYLQRKILNQTLPP-HRINELEMYKFNPETLAAdyasSGNGGREEWYFFSPRDQKYPNGSRLRRDPKCGYWKSTGAYKDV 158
                    79*************************999.67**************8534433333667************************************ PP

            NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++vglk+ Lvfyk r+p  +ktdW+mhe+++
  29841.m002790 159 RF-NGHKVGLKRLLVFYKRRSPF-HKTDWIMHEFSI 192
                    *9.999***********988888.8*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-4563220IPR003441NAC domain
PROSITE profilePS5100546.24364221IPR003441NAC domain
PfamPF023651.0E-2265192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEYTADPTSN NVSGILDSLI NDNETDITAI NVAVAVADHD MPDADIVPAV DNNNREEGEY  60
LKILPPGYKF KPSDGELIVH YLQRKILNQT LPPHRINELE MYKFNPETLA ADYASSGNGG  120
REEWYFFSPR DQKYPNGSRL RRDPKCGYWK STGAYKDVRF NGHKVGLKRL LVFYKRRSPF  180
HKTDWIMHEF SINNPLDRRR PGIHDMELWQ HDWVLCRVYN RIYNKPPKAS SRPAQQPLEI  240
ENENHLPAQP IVGANGLDSS FAQMLEPASS SPSEFPCHQI QLPSDLEYDS HLPRADQMPE  300
NDDNAITSSL EVITNKISAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-396422120168NAC domain-containing protein 19
3swm_B3e-396422120168NAC domain-containing protein 19
3swm_C3e-396422120168NAC domain-containing protein 19
3swm_D3e-396422120168NAC domain-containing protein 19
3swp_A3e-396422120168NAC domain-containing protein 19
3swp_B3e-396422120168NAC domain-containing protein 19
3swp_C3e-396422120168NAC domain-containing protein 19
3swp_D3e-396422120168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29841.m002790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517569.20.0NAC transcription factor 32
TrEMBLB9RV000.0B9RV00_RICCO; Transcription factor, putative
STRINGXP_002517569.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-41NAC family protein