PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29841.m002814
Common NameRCOM_0898180
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 185aa    MW: 20881 Da    PI: 9.5514
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29841.m002814genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.7e-061337126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   +kt lC+ f+  G+C+yG++C FaHg
  29841.m002814 13 FKTQLCSKFRF-GHCRYGNKCFFAHG 37
                   699****9977.*************8 PP
2zf-CCCH20.39.4e-078097826
                   GGGGTS--TTTTT-SS-SS CS
        zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                   f++r  +C yGd+CkF Hg
  29841.m002814 80 FYFR-QECTYGDKCKFLHG 97
                   7888.9************9 PP
3zf-CCCH31.72.6e-10139165127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +k++lC+ +  tG C+yG  C+FaHg+
  29841.m002814 139 KKYRLCNKWKMTGSCPYGKMCCFAHGF 165
                    59***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-12842IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-61238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-61243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5211239IPR000571Zinc finger, CCCH-type
SMARTSM003560.0227198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5967199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-774101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-77698IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-58097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-7136165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54138166IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7139165IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-10140164IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPVAIDNVMN GNFKTQLCSK FRFGHCRYGN KCFFAHGNHE VRHCLPNLQL QRPIVIENGL  60
GRVWNGVNRM ANLSNVCKMF YFRQECTYGD KCKFLHGVPD NSMKRGSGYC RENSSISIKS  120
RGISGDNRSG FASLKPVIKK YRLCNKWKMT GSCPYGKMCC FAHGFAGPLA ERTVSEADSV  180
GEWND
Cis-element ? help Back to Top
SourceLink
PlantRegMap29841.m002814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573750.11e-122zinc finger CCCH domain-containing protein 56
TrEMBLB9RV231e-136B9RV23_RICCO; Uncharacterized protein
STRINGXP_002517592.11e-137(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-17C3H family protein