PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29842.m003704
Common NameLOC8267433, RCOM_0906820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 494aa    MW: 54268.1 Da    PI: 6.5818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29842.m003704genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-053874241254
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  29842.m003704 387 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 424
                    677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11385440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.75E-6385429No hitNo description
Gene3DG3DSA:4.10.280.101.2E-8389432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAEEFQTGIC GGNWWSLSKN MFMGGSSPCS AGHDLGSTYG SWLVSDMVDH LKPRSSISCK  60
DSTNINTILV SDHNSVVFQD SHKPQQQSDS DHSGGSSSIL MDNSTLQMMS FGISSSSSSS  120
SPSSDWSCQT LLRGNGRGES YNSMLQEDMN TPGLNNTSQI QKDWSPKSFT SIGEDSTINA  180
YKATNQDFSL DHQQQQRLNH PTTCQNLSTS FPMGSSSASY GYPATVIQGL YEPDPQPQPQ  240
QQQQQQSLFS ERTMNYASPS NYGTILNELS PSWSKLAPYI RPSLPKQQQQ PAAGGGLHFS  300
NNTPFWNPSG SATALNDIKA SFVQSNNSQP QYLMPTFEEK PNCPNVTLKP NNEQVRDSGS  360
VVKKGSEPAI KRARIETPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEY  420
IKFLHDQVSV LSTPYMKNGN PIQHQQAEKL KETEGLKQDL KSRGLCLVPI SSTFPVANET  480
TVDFWTPTFG GTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29842.m003704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518591.10.0transcription factor bHLH112 isoform X1
TrEMBLB9RXX20.0B9RXX2_RICCO; Transcription factor, putative
STRINGXP_002518591.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-64bHLH family protein