PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29844.m003167
Common NameLOC8280172, RCOM_0909000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 234aa    MW: 27269.2 Da    PI: 8.4327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29844.m003167genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.0001180124554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ Er RR+  ++++  L ++lP+      +K +K +i ++A + I++L
  29844.m003167  80 RKMSERLRRETEKTGYLALYSVLPPG-----TKKDKNSIMQMASKRIQEL 124
                    4899********************97.....7999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1072143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.89975124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-479125No hitNo description
Gene3DG3DSA:4.10.280.104.6E-579146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-581130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDHFFGEECL QIDAFWDVLG PVLDQSAFQP YTSIPRSEIA ANRSNSTNMN KRMIEFMKRS  60
FPVVTTETQK SDDSTRCYRR KMSERLRRET EKTGYLALYS VLPPGTKKDK NSIMQMASKR  120
IQELKGSKEV LERRNYELEV KLEEMRIRNE STSAKIQFKV HYPGTSGMTY MVEVLKCLNS  180
LGSKIRSIES SFSDQGIAAV MDIETQISEA EVRKEVQRTL EDLQWKLQFH FLEY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29844.m003167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517016.11e-176transcription factor bHLH92
TrEMBLB9RTE71e-174B9RTE7_RICCO; DNA binding protein, putative
STRINGXP_002517016.11e-175(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-34bHLH family protein