PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29844.m003222
Common NameLOC8280226, RCOM_0911060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 359aa    MW: 41213.3 Da    PI: 5.0173
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29844.m003222genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.2e-36401312102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+i+ed ++++++sws+ +nsfvv+d++ f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i
  29844.m003222  40 FLTKTYDIVEDISTNHIVSWSRGNNSFVVWDPQAFSLSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNI 126
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k+
  29844.m003222 127 RRRKT 131
                    ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-6236129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNRVGRVKEE YAGAGSSSYS SGLAVPQPVV GLNDAGPPPF LTKTYDIVED ISTNHIVSWS  60
RGNNSFVVWD PQAFSLSLLP RYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
HLLKNIRRRK TPQPQNSQQS LDPCVELGRF GLDGEIDRLR RDKQILMMEL VKLRQQQQNT  180
KASLQLMEHR LKRTESKQQQ MMSFLARAMQ NPNFVQQLVQ QKDKRKILED VITKKRRRPI  240
GQVPSNDQVD EEIDQGRLGV EPFVKIEPEE FGNLSEFEVS DLDTLAMTMQ EVSGSQHNLV  300
EECIEKGYEH AGKGKDIDEE FWEDLWNDDT GEEMGILGGQ AEDVDVLVEQ LGYLGYSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-27151314131Heat shock factor protein 1
5d5v_B6e-27151314131Heat shock factor protein 1
5d5v_D6e-27151314131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223237KRKILEDVITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29844.m003222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517070.10.0heat stress transcription factor A-6b isoform X2
SwissprotQ9LUH81e-137HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9RTK10.0B9RTK1_RICCO; Heat shock factor protein HSF30, putative
STRINGXP_002517070.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-139heat shock transcription factor A6B