PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29844.m003241
Common NameRCOM_0911450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CPP
Protein Properties Length: 727aa    MW: 79552.6 Da    PI: 5.6033
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29844.m003241genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.15.5e-16433471240
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  29844.m003241 433 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 471
                    589**********************************96 PP
2TCR512.9e-16518556139
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                    ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  29844.m003241 518 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 556
                    589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17432473IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.252433558IPR005172CRC domain
PfamPF036381.4E-11435470IPR005172CRC domain
SMARTSM011143.7E-17518559IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11520556IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDTPEKKTQI TTPLSKFEDS PVFNYINSLS PIKPVKSIHI TQTFQSLSFS SLPSIFTSPH  60
VSSHKESRFL RRHNNSDPRK PELPSQNGNK VGSNEGATLD VAQLYDDNSS ELQETFDPVV  120
SIGEVSVEPS SEQVKFAIEL PRRLKYDCGS PENDATPCCG PQVDCVSKLT GMSALEVSQK  180
CLPEHEAHLQ GMYHTEQKKE SMECDWEMIS DAADLLIFSS PIDTESFKVL MQKSMGPSKQ  240
HDLENPSTQP GETIEPKEMN QTWDNVDANN VPNKEAVSNL HRGMRRRCLD FEMVGARRKN  300
LVDGSTSSTS IGGQPDEKIA STDKQLVPVK PGGDSSKCVL PGIGLHLNAL AITSKGSKSV  360
KLENLSCGIS LASSVASFHS LPTCEELNES LLPLAPERDT DPTEDGVPLV EDVSQASACL  420
VTEERKLEGE GEACKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCQECFNK PIHEDTVLAT  480
RKQIESRNPL AFAPKVIRSS EPVTEIGDEF SKTPASARHK RGCNCKKSNC LKKYCECYQG  540
GVGCSINCRC EGCKNAFGRK DGSAPSETEA EPEEETEGDE NNGADKVAQN IEIENNEEQI  600
PNSALPMTPL PLCRPLLQLP FSSKSKPPRS FLGIGSSSGL YTSQKYGKPN ILRPEQKFEK  660
QLQTVPDDDM PEVLRGNYTP STGIKTSPNS KRVSPPQSIL GSSPGLRSGR KLILQSIPSF  720
PSLTPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1743755514120Protein lin-54 homolog
5fd3_B3e-1743755514120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29844.m003241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573539.10.0protein tesmin/TSO1-like CXC 3
TrEMBLB9RTM00.0B9RTM0_RICCO; Tso1, putative
STRINGXP_002517089.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-159Tesmin/TSO1-like CXC domain-containing protein