PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29848.m004545
Common NameRCOM_0921470
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 211aa    MW: 23684.7 Da    PI: 9.041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29848.m004545genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.55.6e-18172209137
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                    ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpv+kk
  29848.m004545 172 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVRKK 209
                    58***************************99*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.764167211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-17168209IPR003657WRKY domain
SuperFamilySSF1182901.44E-15169209IPR003657WRKY domain
SMARTSM007741.2E-7172210IPR003657WRKY domain
PfamPF031061.3E-13173209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDSASWVNTS LDLNVNSTFK HIDSVPKREL LAVDFSGLDP KVPIKEEKPF LDPQTSVLVE  60
ELTRISTENK KLTQMLTVLC ENYNVLQNHL ADLMSKNSDK EIIAPSSSRK RKAAESEDYS  120
NIISGANNIN NGTTESTSSD ELESGTKRTK EIKTKISSAY LRTDPSDTSL VVKDGYQWRK  180
YGQKVTRDNP SPRAYYKCSF APSCPVRKKK L
Cis-element ? help Back to Top
SourceLink
PlantRegMap29848.m004545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012489.11e-151WRKY transcription factor 18
TrEMBLB9RNW41e-153B9RNW4_RICCO; WRKY transcription factor, putative
STRINGXP_002515433.11e-154(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-45WRKY DNA-binding protein 40