PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29848.m004632
Common NameLOC8259457, RCOM_0924050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 192aa    MW: 21638.1 Da    PI: 7.443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29848.m004632genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19555155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                   ++y+GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  29848.m004632  5 KKYRGVRQRQ-WGSWVSEIRHP-----LlkRRIWLGTFETAEAAARAYDQAAILMNG 55
                   59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-23563No hitNo description
PfamPF008471.2E-11655IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-33664IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20664IPR016177DNA-binding domain
PROSITE profilePS5103222.392663IPR001471AP2/ERF domain
SMARTSM003802.2E-39669IPR001471AP2/ERF domain
PRINTSPR003679.8E-11718IPR001471AP2/ERF domain
PRINTSPR003679.8E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVQSKKYRGV RQRQWGSWVS EIRHPLLKRR IWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPRSDAEET SDDNDSPLPS SKALSELLNT KLRKCCKDPS PASLTCLRLD NDNSHIGVWQ  120
KHSGSRSSSN WVMKVELGNK KTQVIEEERS SQSSTSSLTS ISSPTVENQP INGTDEEDRI  180
AMQMIEELLN WN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17263163ATERF1
3gcc_A3e-17263163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29848.m004632
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515519.11e-141ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9582e-74SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLB9RP501e-139B9RP50_RICCO; DNA binding protein, putative
STRINGXP_002515519.11e-140(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.17e-70ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]