PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29851.m002359
Common NameLOC8275575, RCOM_0934830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 355aa    MW: 38953.6 Da    PI: 9.3567
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29851.m002359genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.7e-54151421128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ 
  29851.m002359  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASn 109
                    79****************************.89***************8888999**************************************985 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  29851.m002359 110 GAQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                    6778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-649177IPR003441NAC domain
PROSITE profilePS5100562.33915177IPR003441NAC domain
PfamPF023653.2E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MESTDSSSGS QHPHLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILASNG AQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDNNNSSS KPPGFDLANK KGSLRLDDWV LCRIYKKNNS  180
QRTMDRDKED SMEGFLATLP INPKPASSSV SKPAHAYGSV LDNEENFFEG ILTGGDGMQN  240
SSVSHQFPSS SPKQHMSIAS ISTSNPLAIK RVIPSQYWNH EAIAGSSIAA ASSGKRFHGD  300
LNSCSTGTED NTSFVSLLSQ LPQAGAPFHS NTFIGSLGDG VLRQQFQLPS MNWNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-751518017168NO APICAL MERISTEM PROTEIN
1ut4_B1e-751518017168NO APICAL MERISTEM PROTEIN
1ut7_A1e-751518017168NO APICAL MERISTEM PROTEIN
1ut7_B1e-751518017168NO APICAL MERISTEM PROTEIN
3swm_A1e-751518020171NAC domain-containing protein 19
3swm_B1e-751518020171NAC domain-containing protein 19
3swm_C1e-751518020171NAC domain-containing protein 19
3swm_D1e-751518020171NAC domain-containing protein 19
3swp_A1e-751518020171NAC domain-containing protein 19
3swp_B1e-751518020171NAC domain-containing protein 19
3swp_C1e-751518020171NAC domain-containing protein 19
3swp_D1e-751518020171NAC domain-containing protein 19
4dul_A1e-751518017168NAC domain-containing protein 19
4dul_B1e-751518017168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29851.m002359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519008.10.0NAC transcription factor 25
SwissprotQ8GY421e-123NAC25_ARATH; NAC transcription factor 25
TrEMBLB9RZ390.0B9RZ39_RICCO; Transcription factor, putative
STRINGXP_002519008.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-123NAC domain containing protein 25