PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29851.m002407
Common NameLOC8279496, RCOM_0936210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 218aa    MW: 24931.4 Da    PI: 10.3549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29851.m002407genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.82.6e-31291412102
                    HHHHHHHHHCTG.....................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXT CS
   HSF_DNA-bind   2 Flkklyeilede.....................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskske 76 
                    Fl+k+y++le++                     + k++++w+++gn f+v+ + +f++  Lp+yFkh+nf+SF+RQLn+YgFkk++++        
  29851.m002407  29 FLSKTYDLLEENgegssssppplllganntgvvDGKKIVTWNAEGNGFIVWSPADFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKL------- 117
                    999*******8888888899999999999999999*************************************************99876....... PP

                    TSEEEEESXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  77 kiweFkhksFkkgkkellekikrkks 102
                      weFkh++F+kg++++l +i rkk 
  29851.m002407 118 --WEFKHEKFQKGSRHMLVEITRKKC 141
                    ..*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3319134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-3625139IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2729139IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-2364139IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSKNLSIISR RSPSTSSQQS PKLKAPAPFL SKTYDLLEEN GEGSSSSPPP LLLGANNTGV  60
VDGKKIVTWN AEGNGFIVWS PADFSELTLP RYFKHNNFSS FIRQLNTYGF KKTSSKLWEF  120
KHEKFQKGSR HMLVEITRKK CEPSVFPAYL RASNEHNNAP NAVEDNNRLL LLKENNNLRR  180
DNLQLQMQIA QFRDLQTKLL DCLTQYMGSQ QHKIRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-146213932120Heat shock factor protein 1
5d5u_B8e-146213941129Heat shock factor protein 1
5d5v_B8e-146213941129Heat shock factor protein 1
5d5v_D8e-146213941129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29851.m002407
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519055.11e-162heat stress transcription factor B-2a
TrEMBLB9RZ861e-161B9RZ86_RICCO; DNA binding protein, putative
STRINGXP_002519055.11e-162(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-29heat shock transcription factor A1D