PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29851.m002411

Common Name

LOC8279500, RCOM_0936360

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LSD

Protein Properties

Length: 142aa MW: 15434.6 Da PI: 5.5203

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29851.m002411	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.1	1.6e-14	56	80	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlLsYPrGA++V+C++C+ V 29851.m002411 56 CGSCRTLLSYPRGARHVQCSSCQMV 80 ***********************88 PP
2	zf-LSD1	31.6	2.8e-10	94	117	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C +lL+YP+ A+sVRC++C 29851.m002411 94 CGKCEILLMYPYPASSVRCSSCCS 117 **********************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.5E-17	53	83	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-12	56	80	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.6E-8	91	119	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-9	94	118	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MIESKEGEAM EVENKQQADD VEDGPPSGWQ SIPLPLPLPQ PSPPPPPSSE MAQMVCGSCR 60 TLLSYPRGAR HVQCSSCQMV NFVLEAHEVG QVNCGKCEIL LMYPYPASSV RCSSCCSVTE 120 IGAHNKRPPW SVIQGHPPNP IH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29851.m002411

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519059.1	1e-100	protein LOL2
Swissprot	O65426	6e-43	LOL2_ARATH; Protein LOL2
TrEMBL	B9RZ90	1e-98	B9RZ90_RICCO; Uncharacterized protein
STRING	XP_002519059.1	2e-99	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-36	lsd one like 2

Link Out ? help Back to Top
Phytozome	29851.m002411
Entrez Gene	8279500