PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29851.m002486
Common NameRCOM_0939050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 189aa    MW: 21411.3 Da    PI: 8.297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29851.m002486genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.65.8e-101031741587
                    -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3  15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++p +fa+ ++     sk++++++++g  r+  v+  +  ++g+++  +GW eF ++n L e D+++F+l++ 
  29851.m002486 103 EKIVPASFARIYMRG--ASKDIRVKSSKGdgRERAVQSDW-IRRGGCLRLNGWAEFYNDNYLVEADVCLFELIHM 174
                    4589*****888644..56789999988855777777755.4455555556********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023626.6E-8102175IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-9104180IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-8105175IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGDDASSEIL DSNPNPSASK CTSRKMDYTL PPKNLPTPIY AAFGDKQEYQ RTGKSCKMEE  60
EDDMVQNGNF NDAKSKAKFE IFTSIKFHST LSRMPQESKN AVEKIVPASF ARIYMRGASK  120
DIRVKSSKGD GRERAVQSDW IRRGGCLRLN GWAEFYNDNY LVEADVCLFE LIHMRNIVLK  180
ASVFPAYLE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29851.m002486
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574564.11e-115B3 domain-containing transcription factor VRN1
TrEMBLB9RZG41e-140B9RZG4_RICCO; Uncharacterized protein
STRINGXP_002519133.11e-141(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-09B3 family protein