PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29851.m002487
Common NameRCOM_0939060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 109aa    MW: 12883.7 Da    PI: 8.0752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29851.m002487genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-1411881697
                   EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     lp kf++e+g++ ++  +lt  +++gr+W+v l+  k +++  +l +GW eF++ + ++ g f+vF+++g s+f  +v +f
  29851.m002487 11 QGLPLKFVKEYGNELANIAKLT-VSSNGRVWRVGLT--KERNHtWYLHNGWHEFASYHSICYGYFLVFEYKGMSNF--KVFIF 88
                   579********86644444444.4579********5..54444467999*********************998888..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.055191IPR003340B3 DNA binding domain
SMARTSM010192.7E-5791IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-191193IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-111287IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-181297IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-121389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MDGIFNFEHL QGLPLKFVKE YGNELANIAK LTVSSNGRVW RVGLTKERNH TWYLHNGWHE  60
FASYHSICYG YFLVFEYKGM SNFKVFIFDM SACEIPYWCN KDPPSNMKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29851.m002487
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021680739.15e-28B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLB9RZG52e-77B9RZG5_RICCO; DNA binding protein, putative
STRINGXP_002519134.14e-78(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein