PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29854.m001136

Common Name

LOC8281562, RCOM_0956520

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

YABBY

Protein Properties

Length: 190aa MW: 21101.8 Da PI: 8.5006

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29854.m001136	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.6	4.7e-68	3	157	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + se+vCyv+CnfCntilavsvPs+ l+++vtvrCGh ++llsvn+ + q+ + ++ + ++ + ++e+l++ + ++++ ++ +s 29854.m001136 3 LELVSERVCYVHCNFCNTILAVSVPSSNLLTIVTVRCGHGANLLSVNMGGSLQTFPLQDP--------QSQKVQLNSEDLNKDTGSSSKCNKVTSF 90 56789***********************************************999985........5555555555555544433333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e+ d+e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl 29854.m001136 91 ----ESADNEPPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 ....567889999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-72	7	157	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-8	102	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-5	105	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLELVSERV CYVHCNFCNT ILAVSVPSSN LLTIVTVRCG HGANLLSVNM GGSLQTFPLQ 60 DPQSQKVQLN SEDLNKDTGS SSKCNKVTSF ESADNEPPRM PPIRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKHAKIDHQ TFGAESTQKS 180 NGLYEINGTL

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29854.m001136

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002515880.1	1e-142	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	4e-79	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	B9RQ61	1e-140	B9RQ61_RICCO; Axial regulator YABBY2, putative
STRING	XP_002515880.1	1e-141	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-72	YABBY family protein

Link Out ? help Back to Top
Phytozome	29854.m001136
Entrez Gene	8281562

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]