PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29863.m001066
Common NameLOC8283177, RCOM_0960400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 448aa    MW: 47889.4 Da    PI: 6.0581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29863.m001066genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20222271255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  29863.m001066 222 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 271
                    7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-14222271IPR001471AP2/ERF domain
PROSITE profilePS5103225.712222279IPR001471AP2/ERF domain
SMARTSM003807.0E-37222285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-33222280IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22222280IPR016177DNA-binding domain
PRINTSPR003671.3E-11223234IPR001471AP2/ERF domain
CDDcd000188.36E-15230281No hitNo description
PRINTSPR003671.3E-11245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MCLLNLKVAN RGRSDEYIRY PAVATTDSGD EADGTNSNQQ SFLLNQGQQQ QPTQMFPGYG  60
STREMSAMVS ALTHVVSGQG AAATASSGGG DWGYVGLEGV IPSTSYGLAS SSTSSSSPPS  120
LSAAYSSSGS GFWVGQKRGR EEEVAGAQLV ESLPRVYRGY GDFRSSQGDS SSSGATVTEE  180
EATTPSIIIP TTTTTAPPPS TSSTETVSYE EIGGGSSERR RRYRGVRQRP WGKWAAEIRD  240
PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVRILPPPIQ TTIPVSQIPM  300
SRPPPPQPPS QQQQQQQSLF HLQTDNPLRD YWEYSQLLQS SGDFHGVQQP SSLLEQMFYN  360
QQLASLQSNL SLPSSALSFG ASSSGLSTLS SSSSSSLSAG SSASFPLLLA GQQLGYFRTP  420
PQNQNQPSGS DISVPPRSDS THYPSSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23221282163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29863.m001066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524310.10.0ethylene-responsive transcription factor ABR1
TrEMBLB9SE910.0B9SE91_RICCO; Uncharacterized protein
STRINGXP_002524310.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-17ethylene response factor 110