PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29883.m002031

Common Name

LOC8274766, RCOM_0993110

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 188aa MW: 21120.8 Da PI: 5.688

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29883.m002031	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H 29883.m002031 36 YECVFCKRGFTTAQALGGHMNIH 58 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.5E-4	34	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.55E-6	34	62	No hit	No description
PROSITE profile	PS50157	10.99	36	63	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	38	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MESNPHLEDA NKSSSEEETD RSEKANDHDM GTGRSYECVF CKRGFTTAQA LGGHMNIHRK 60 DRAKPSLASS SSISSKVDED YYASLRGYTP IQSFPPHYYS TANHHHEVHT NYQTFFPPSS 120 GGSFRPPNGD GLYVQSPQIL NPFEDDWRRS LSLQIGPSHV DDDHNKQKEK DGSVADELDL 180 ELRLGHDP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29883.m002031

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521018.1	1e-139	probable transcriptional regulator RABBIT EARS
TrEMBL	B9S4W1	1e-138	B9S4W1_RICCO; Nucleic acid binding protein, putative
STRING	XP_002521018.1	1e-139	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	2e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	29883.m002031
Entrez Gene	8274766