PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29887.m000237
Common NameRCOM_0996800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 194aa    MW: 22572.6 Da    PI: 11.0722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29887.m000237genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24e-1595189199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ffk  ++s+  k g l +pk+f+ +++ +  ++ +  ++  ++r W v+l iy ++s++  +++GW  F+++n L++gD+++F+l++r++   +v+
  29887.m000237  95 FFKLVLTSSCVKGGGLNVPKNFIMDMK-P--RTYETNFQV-KNRWWPVRLnIYLRHSRG-KFSAGWILFARENSLQAGDVCIFELIDRETMLIKVS 185
                    89999******************6663.3..344555444.5699*****555666655.4899**********************9999889999 PP

                    EE-S CS
             B3  96 vfrk 99 
                    +fr+
  29887.m000237 186 IFRR 189
                    9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1689188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1793190IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1395189IPR003340B3 DNA binding domain
PROSITE profilePS5086312.60595190IPR003340B3 DNA binding domain
CDDcd100171.05E-1995188No hitNo description
SMARTSM010192.5E-1395190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASCSKQDNE RLMFKTNRPH FFKVVLPQTI RERKLEGLIV KRIMAKEASL VKNKGNNKKL  60
TQGKRVRREH VEKPSYSALS GEVEAAEKFT SLHPFFKLVL TSSCVKGGGL NVPKNFIMDM  120
KPRTYETNFQ VKNRWWPVRL NIYLRHSRGK FSAGWILFAR ENSLQAGDVC IFELIDRETM  180
LIKVSIFRRV KQLV
Cis-element ? help Back to Top
SourceLink
PlantRegMap29887.m000237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015425.13e-96B3 domain-containing transcription factor VRN1
TrEMBLB9T2311e-141B9T231_RICCO; Uncharacterized protein
STRINGXP_002532300.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-13B3 family protein