PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29887.m000238
Common NameRCOM_0997110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 180aa    MW: 20808.1 Da    PI: 11.1525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29887.m000238genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.53e-1929113590
                    -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    + + + + ++ + +p +fa+++  ++ +    tl+ ++gr+W+v++++r++ g+  + l  GWk+F+++n+L+ gD+++F+l++r+++
  29887.m000238  29 FANRYGNGKHSIHIPQSFATKYLRSH-G--NATLNVLDGRTWSVEYKIRRTHGTtrTRLFHGWKKFAQDNHLEIGDVCIFELINRTKT 113
                    56777888899***********4443.3..48888899********997777665688889*********************987444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2014112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-1816113IPR015300DNA-binding pseudobarrel domain
CDDcd100179.55E-1519111No hitNo description
PROSITE profilePS5086312.53425121IPR003340B3 DNA binding domain
SMARTSM010193.4E-1028121IPR003340B3 DNA binding domain
PfamPF023622.7E-1732113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-4117167IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASCSKQDNG RLMFKTNRPH FFKGITEKFA NRYGNGKHSI HIPQSFATKY LRSHGNATLN  60
VLDGRTWSVE YKIRRTHGTT RTRLFHGWKK FAQDNHLEIG DVCIFELINR TKTAFKHVPV  120
KSMVKCTKRS RENVMLIVGN RQWPVKMISY TSDGRSKFSA GWLGFARGIL YKLDIFAFSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29887.m000238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015420.19e-46B3 domain-containing transcription factor VRN1-like
TrEMBLB9T2321e-132B9T232_RICCO; Uncharacterized protein
STRINGXP_002532301.11e-133(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1608859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-07B3 family protein