PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29887.m000243
Common NameRCOM_0997760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 116aa    MW: 13000 Da    PI: 10.0358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29887.m000243genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3621e-1925112193
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                    ffkv ++s++ ++g l++p +f++++ +k+ e++t    +   r+W+vkl + +++ +  +++GW++F+k+n +++gD ++F+l+++++  ++
  29887.m000243  25 FFKVNIRSSHVEHGSLTVPVEFFRSYAKKSIENVT---LQVARRQWTVKLLIYRSPHQGCFSAGWSSFAKENSIQVGDACIFELVNSET--ML 112
                    99************************866555434...44577*******99999999999**********************987433..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2120114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2023114IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-1725110IPR003340B3 DNA binding domain
PROSITE profilePS5086313.52125116IPR003340B3 DNA binding domain
CDDcd100177.35E-1925112No hitNo description
SMARTSM010191.1E-1825116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MQRHSCSKVP EAVVAANKVA SLNPFFKVNI RSSHVEHGSL TVPVEFFRSY AKKSIENVTL  60
QVARRQWTVK LLIYRSPHQG CFSAGWSSFA KENSIQVGDA CIFELVNSET MLLKVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-141211635138B3 domain-containing transcription factor VRN1
4i1k_B1e-141211635138B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29887.m000243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015423.15e-77LOW QUALITY PROTEIN: B3 domain-containing transcription factor VRN1-like
TrEMBLB9T2373e-80B9T237_RICCO; Uncharacterized protein
STRINGXP_002532306.14e-81(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein