PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003258
Common NameRCOM_0999660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 331aa    MW: 36765.9 Da    PI: 5.2477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003258genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l +++   G g+W++ ++  g+ R++k+c++rw +yl
    29889.m003258 14 KGRWTAEEDEILTKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.483965IPR017930Myb domain
SMARTSM007175.6E-111363IPR001005SANT/Myb domain
PfamPF002493.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-211568IPR009057Homeodomain-like
SuperFamilySSF466896.74E-201588IPR009057Homeodomain-like
CDDcd001671.18E-71661No hitNo description
PROSITE profilePS500904.03162121IPR017877Myb-like domain
SMARTSM007174966131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-769124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTKYIL ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TKEEDETIVK LHTALGNRKI YSFSKNDSLS ITTINIADVP GACKSRSSNK  120
ITARSTIKRQ KQDRPKSGTL APDHEPAAKE KSITSSFVGQ VEGNQEMGYV QKGLKEHEPK  180
ENTRRESCMS SSGERFNATE VVCSRKEGES EVWGPYEWLD SEINRLKYAL EEGEVVGPSG  240
NVTNAIDDNT LQKDRESDVL GPSNPEGRGN EVMLGLDIVT SGDLERESSC SATAWSSNGE  300
SNGEWTQGIV DDDSRKELWD EGDKILSWLW G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00668SELEXTransfer from GRMZM2G016020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574695.10.0transcription factor MYB111
TrEMBLB9RZL80.0B9RZL8_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002519187.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-49myb domain protein 111