PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29889.m003269

Common Name

RCOM_0999870

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

CAMTA

Protein Properties

Length: 918aa MW: 104145 Da PI: 7.4574

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29889.m003269	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	126.2	1.3e-39	31	136	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 + ++rwl+++ei+aiL n++ ++++ ++ + p +k ++frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+e+n+tf rrc 29889.m003269 31 EATSRWLRPNEIHAILCNYKYFTIHVKPVKLP----------RKAKNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDNSTFVRRC 116 4489*****************888777666..........67889********************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e++ 29889.m003269 117 YWLLDKTLEHIVLVHYRETQ 136 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	62.658	25	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.2E-59	28	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-34	31	134	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	3.0E-4	369	455	IPR002909	IPT domain
SuperFamily	SSF81296	1.05E-12	370	456	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.86E-15	553	663	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.9E-16	553	666	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.0E-7	554	633	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.11E-17	556	668	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.592	571	636	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.7E-6	604	633	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.155	604	636	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.19E-6	716	819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	34	749	771	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.712	769	796	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.011	771	789	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	190	772	790	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0056	791	813	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.438	792	816	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0053	794	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	31	871	893	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.895	873	901	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MESSLPGRLV GSDIHGFHTL QDLDFGNIMA EATSRWLRPN EIHAILCNYK YFTIHVKPVK 60 LPRKAKNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGEDNS TFVRRCYWLL 120 DKTLEHIVLV HYRETQELQG SPVTPLNSNS SSVSDQSPRL LSEADSGTYV SDEKELQGDS 180 LTVINHELRL HEINTLEWDE LVTNDPNNSA TAKEGDGLSI ICYKIMGFAQ QNQIAVNGSM 240 NNGRYLSPYN LSAEISPLDN LTKPVVRSND SHFSIPDNEY IQSTGVQVNS NVQQKGSNFL 300 GTGDTLDMLV NDGLQSQDSF GRWIDYIIAD SPGSVDNAVL ESSFSSGLDS STSPAIDQLQ 360 SSVPEQIFVI TDISPAWAFS TETTKILVVG YFHEQYLQLA KSNMFCVCGD AYALVDIVQT 420 GVYRCLVSPH FPGIVNLFLS LDGHKPISQL INFEYRAPLH DPVVSSEDKT NWEEFKLQMR 480 LAHLLFSTSK SLGIQTSKVS SITLKEAKKF DHKTSNIHRS WAYLIKLIED NRLSFSQAKD 540 SLFELTLKSM LKEWLLERVV EGCKTTEYDA QGQGVIHLCS ILGYTWAVYL FSWSGLSLDF 600 RDKHGWTALH WAAYYGREKM VAVLLSAGAK PNLVTDPTKE NPDGCMAADL ASMKGYDGLA 660 AYLSEKALVA HFKDMSIAGN ASGTLQQTSA TDIVNSENLS EEELYLKDTL AAYRTAADAA 720 ARIQSAFREH SLKVRTTAVQ SANPEDEART IVAAMKIQHA YRNFETRKKM AAAVRIQYRF 780 RTWKMRKEFL NMRRQVIRIQ AAFRGYQVRR QYRKIIWSVG VLEKAILRWR LKRKGFRGLQ 840 IDPVEAVADL KQGSDTEEDF YKASRKQAEE RVERAVVRVQ AMFRSKKAQA EYRRMKLTHY 900 QVKLEYEELL DHDIDIDR

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MESSLPGRLV GSDIHGFHTL QDLDFGNIMA EATSRWLRPN EIHAILCNYK YFTIHVKPVK  60
LPRKAKNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGEDNS TFVRRCYWLL  120
DKTLEHIVLV HYRETQELQG SPVTPLNSNS SSVSDQSPRL LSEADSGTYV SDEKELQGDS  180
LTVINHELRL HEINTLEWDE LVTNDPNNSA TAKEGDGLSI ICYKIMGFAQ QNQIAVNGSM  240
NNGRYLSPYN LSAEISPLDN LTKPVVRSND SHFSIPDNEY IQSTGVQVNS NVQQKGSNFL  300
GTGDTLDMLV NDGLQSQDSF GRWIDYIIAD SPGSVDNAVL ESSFSSGLDS STSPAIDQLQ  360
SSVPEQIFVI TDISPAWAFS TETTKILVVG YFHEQYLQLA KSNMFCVCGD AYALVDIVQT  420
GVYRCLVSPH FPGIVNLFLS LDGHKPISQL INFEYRAPLH DPVVSSEDKT NWEEFKLQMR  480
LAHLLFSTSK SLGIQTSKVS SITLKEAKKF DHKTSNIHRS WAYLIKLIED NRLSFSQAKD  540
SLFELTLKSM LKEWLLERVV EGCKTTEYDA QGQGVIHLCS ILGYTWAVYL FSWSGLSLDF  600
RDKHGWTALH WAAYYGREKM VAVLLSAGAK PNLVTDPTKE NPDGCMAADL ASMKGYDGLA  660
AYLSEKALVA HFKDMSIAGN ASGTLQQTSA TDIVNSENLS EEELYLKDTL AAYRTAADAA  720
ARIQSAFREH SLKVRTTAVQ SANPEDEART IVAAMKIQHA YRNFETRKKM AAAVRIQYRF  780
RTWKMRKEFL NMRRQVIRIQ AAFRGYQVRR QYRKIIWSVG VLEKAILRWR LKRKGFRGLQ  840
IDPVEAVADL KQGSDTEEDF YKASRKQAEE RVERAVVRVQ AMFRSKKAQA EYRRMKLTHY  900
QVKLEYEELL DHDIDIDR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29889.m003269

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025013123.1	0.0	LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	B9RZM9	0.0	B9RZM9_RICCO; Calmodulin-binding transcription activator (Camta), plants, putative
STRING	XP_002519198.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	29889.m003269

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]