PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003386
Common NameLOC8261339, RCOM_1003440
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 637aa    MW: 72800.3 Da    PI: 6.0992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003386genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13586635147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + rW+ eE++ l ++v+++G g+Wk I +       gRt+ ++k++w++ 
    29889.m003386 586 KRRWSVEEEDALREGVQKYGRGNWKVILSSKRdifVGRTEVDLKDKWRNM 635
                      579*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.525581637IPR017930Myb domain
SuperFamilySSF466899.33E-16583636IPR009057Homeodomain-like
SMARTSM007172.2E-7585637IPR001005SANT/Myb domain
PfamPF002493.0E-11586635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-14586637IPR009057Homeodomain-like
CDDcd116601.93E-17587637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MKKLDTDITS WIMELLVRKE LHEPLVKKFL TNPHLPLDND NLRLKKTLLL RSIDSQISDG  60
SVSETILDSL EAIEELDREN HIIITDSMKA AYCAVAVECT VKYLWGNQHK SRSQGKYVEA  120
VKRIWRDRIQ NLEMAKKSDL VTDELRKSRQ KMEAVLLDSH RYKSLKELNT RNVALLLTGD  180
YIHEAMALMG PSFLELVART EREAKEKEVR VQKENKENEF MAEGEMAQRE KEEMEVGAER  240
ENKEKELRAE MAKEKDLRAE RKKKDNEVRE GMTAMEERHK ELMEASTEIR EKEKEGCSAQ  300
VVDCSSDAVP EFDADGLAGQ EIPALANSSS TLSIADKLEI QRKMALQKHK HIAVRRRNKG  360
QARITDSDEL DLEVASSKFD TLSTPEVKRT QEMLNSSFSE LQAAVDDPLP NALHVADTVI  420
AEIERKNPTK EALVETQKGK DVDASNPSTN AVTTEMSSRN VIDVDACNPS TNAVTTEMAS  480
QNVIDVDASN LSANAVTTEM ASRMTSNEPL VENLKLKDIH RHEKDATKPS LMDRNNTAHT  540
YEWNDSIDDS SEGRINRSIR LDSPKRKDVS PLRKYEIQHF AKRRIKRRWS VEEEDALREG  600
VQKYGRGNWK VILSSKRDIF VGRTEVDLKD KWRNMMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519314.10.0uncharacterized protein LOC8261339
TrEMBLB9RZZ50.0B9RZZ5_RICCO; Telomeric repeat binding protein, putative
STRINGXP_002519314.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.17e-25TRF-like 5