PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29900.m001561
Common NameRCOM_1012510
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 246aa    MW: 27343.6 Da    PI: 4.822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29900.m001561genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19128178255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrd      k +r++lg+f+tae Aa a+++a+++++g
  29900.m001561 128 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEAAALAYDKAALRIRG 178
                    7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-31127187IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23128188IPR016177DNA-binding domain
PfamPF008472.3E-14128178IPR001471AP2/ERF domain
SMARTSM003804.4E-37128192IPR001471AP2/ERF domain
PROSITE profilePS5103224.118128186IPR001471AP2/ERF domain
CDDcd000188.25E-21128186No hitNo description
PRINTSPR003676.6E-11129140IPR001471AP2/ERF domain
PRINTSPR003676.6E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRYPKNDNMA MQSDHHLLEN VWASYIGGEG GKPTSMSDQD QVSKTWEELP NLDGRDGTAE  60
MLERLPSLGR WISMGAETWE ELLAGINIPT STNTKLSCNE NMPSSENRSL NKPINGVKGE  120
NKKVATRHYR GVRRRPWGKY AAEIRDSSRK GARVWLGTFD TAEAAALAYD KAALRIRGPK  180
AYLNFPLETV AKAMGIDMEL EKNDDAMVDE PALATVEAST SFGNDFNIVE FQDLGSDYLD  240
SLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27127189466ATERF1
3gcc_A2e-27127189466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29900.m001561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522518.30.0ethylene-responsive transcription factor ERF098
TrEMBLB9S9490.0B9S949_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002522518.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-36ERF family protein