PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29900.m001610
Common NameRCOM_1014730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 227aa    MW: 24859.7 Da    PI: 8.9671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29900.m001610genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-113884354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L +++  +k+L
  29900.m001610 38 KSHSEAERRRRERINAHLATLRGLVPCT-----EKMDKATLLAEVISQVKEL 84
                   58*************************8.....7**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6053584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-93884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-133986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-133986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-104190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.09E-5123191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSQALVLDS EKGELVKAPA PKVGKKGVSE AKALAALKSH SEAERRRRER INAHLATLRG  60
LVPCTEKMDK ATLLAEVISQ VKELRKNAIE ASKGLLIPMP DDEVKVEAYD NGLGDGTLYF  120
KASLCCDYRP ELLSDIKQAI DALQMKLLDA EISTLGVRLK NVLFLTSCRN KNAVNDAEAI  180
KLLTNSIHEA LNSVLDKGCI SPEYSPRTTL PNKRRRVTFL DSSSSNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348ERRRRE
2212216KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap29900.m001610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522566.21e-164transcription factor bHLH30
TrEMBLB9S9971e-163B9S997_RICCO; DNA binding protein, putative
STRINGXP_002522566.11e-164(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-36bHLH family protein