PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29904.m002941
Common NameRCOM_1019500
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 466aa    MW: 52131.1 Da    PI: 6.5696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29904.m002941genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19270318355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  29904.m002941 270 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRG 318
                    8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-31268328No hitNo description
PROSITE profilePS5103222.589269326IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22269327IPR016177DNA-binding domain
SMARTSM003806.5E-36269332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31269327IPR001471AP2/ERF domain
PRINTSPR003678.1E-11270281IPR001471AP2/ERF domain
PfamPF008471.7E-13270318IPR001471AP2/ERF domain
PRINTSPR003678.1E-11292308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MENFMHKEFP CYSFHRMPIG SKYFDDPIIW ETETDHGDTS RENCMKSSST SPSSPERLFS  60
SSDSCSSAEE ASGTNNLIGN IPGFVEQDVS EQNHASSFLS GLNSINPSLL SEIKESSNIP  120
VNFLESFPKL NQTQVSDHQP SSPSKFPNLT LFLQEPSLLL DPSSKQKIDS LSHENRTMFE  180
PMLRFPSSSV SVSQLEQIYG QTSQDQWLKI NQTLTYYPTK GFNDYWLGTT KTQPMKHTGR  240
RVQNHQQKSP LPSMAAAVSS SSSSSQGKLF RGVRQRHWGK WVAEIRLPRN RTRVWLGTFD  300
TAEEAAMAYD TAAYMLRGDY AHLNFPDLKH ELKANSLNGT TAALLEAKLQ AISQGISSGQ  360
NNKKHNVNID PSISTTSSTN KIVYDEKNNS SSKMVKANLG QNPPRKEWQF ELESKVNGGE  420
VVIENKKGNH HHQEVVVASD IDAVQLSRMP SLDMDMIWDA LLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21265336168ATERF1
3gcc_A3e-21265336168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29904.m002941
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518093.20.0ethylene-responsive transcription factor ERF062
TrEMBLB9RWH40.0B9RWH4_RICCO; Uncharacterized protein
STRINGXP_002518093.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-68ERF family protein