PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29904.m003012
Common NameRCOM_1023150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 205aa    MW: 23147.4 Da    PI: 10.7035
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29904.m003012genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.78.9e-20126160135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  29904.m003012 126 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 160
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.281120156IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-15120170IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-15122184No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15124158IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.07E-14125175No hitNo description
PfamPF003202.6E-17126160IPR000679Zinc finger, GATA-type
PROSITE patternPS003440126151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKTRSSYREF AEEELEWLSN KDAFPSVETF VDILTENPGS LQKHRSPVSV LENSTTSSTS  60
NSGHSGTNDS VIMNYCRSLH VPVKARSKPH RRRRRDLGGQ QCWWSQENLK KVKVVKSSSS  120
TIGRKCQHCG AEKTPQWRAG PLGPKTLCNA CGVRYKSGRL VPEYRPASSP TFSSVLHSNS  180
HRKVLEMRRQ KQMMGIMVVK PMEKG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29904.m003012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092669.11e-106GATA transcription factor 1
SwissprotQ8LAU97e-53GATA1_ARATH; GATA transcription factor 1
TrEMBLB9RWP41e-151B9RWP4_RICCO; GATA transcription factor, putative
STRINGXP_002518163.11e-151(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-50GATA transcription factor 1