PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m005953
Common NameLOC8262995, RCOM_1033160
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 603aa    MW: 66511.9 Da    PI: 6.2374
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m005953genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3802.3e-25130231199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++++
  29908.m005953 130 FAKILTPSDANNGGGFSVPRFCADSIfpplnyhAEPPVQ--TLTVTDIHGITWDFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFM--RNMT 221
                    89*********************999****986555555..8************************************************..679* PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++++++v+r+
  29908.m005953 222 GKMFIGVRRA 231
                    *******996 PP
2Auxin_resp821.3e-27283367183
     Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+++a+++  FevvY+Pra++ s+Fvv+++ v  al v +s+GmR+kma+etedss+ ++ +Gt+++ s  d   W++S+Wr+L+
  29908.m005953 283 AVERAAQGFSFEVVYYPRAGWySDFVVRTDVVDGALAVCWSAGMRVKMAMETEDSSRMTWfQGTIASASLPDCGLWRGSPWRMLQ 367
                    6789999************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-30116237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-34124239IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619130232IPR003340B3 DNA binding domain
SMARTSM010197.7E-20130232IPR003340B3 DNA binding domain
CDDcd100177.81E-21130226No hitNo description
PfamPF065075.4E-26283367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MPPSLHPSAD LRRVDRRIWR ACAGSSVQIP TINSRVYYFP QGHLEQSSNS SSIVSSCILS  60
SIALSKPVIP CQISAVQFLA DPVTDEVYTK LLLFPIDSFN PSVPVLEHSG NLEQHHGYDY  120
DDDEDKIVAF AKILTPSDAN NGGGFSVPRF CADSIFPPLN YHAEPPVQTL TVTDIHGITW  180
DFRHIYRGTP RRHLLTTGWS KFVNHKKLIA GDSVVFMRNM TGKMFIGVRR AVRPNNGGSD  240
CARWREQIAC FGGGGGDVKM KVKEEGYSRN GRGKVSPEAV MEAVERAAQG FSFEVVYYPR  300
AGWYSDFVVR TDVVDGALAV CWSAGMRVKM AMETEDSSRM TWFQGTIASA SLPDCGLWRG  360
SPWRMLQVAW DEPEVLQNAK RVSPWQVEYV SPSPPLHGAF PPAKKFRFPE NSGFLTDGEG  420
ELFFPMSGLT NSTMGNINQS LNYHSFPAGM QGARQNPFSV YGLSNFFSED TSHLCSDNVF  480
GNKMVPKLKT VSTELNIGSS PSENLSPDSQ SSIHSCDTEL VGNPGCNSTK AGISSFQLFG  540
KIIHMSQPVE SGFEDAGYVE DYVSKRYNED NPLDLALTSS YTELLSRIDV QCQRASAVEA  600
CSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-661438851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m005953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513844.10.0auxin response factor 17
RefseqXP_015571564.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLB9RJC50.0B9RJC5_RICCO; Auxin response factor
STRINGXP_002513844.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]