PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006082
Common NameLOC8281695, RCOM_1037430
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 268aa    MW: 31204.6 Da    PI: 5.0483
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006082genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-1959112356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  29908.m006082  59 KKRRLSMDQVKALEKNFEVENKLEPERKIRLAEELGLQPRQVAIWFQNRRARWK 112
                    56689************************************************9 PP
2HD-ZIP_I/II125.22.9e-4058150193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrls +qvk+LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktkqlE++y +Lk++y+alk + ++Le+++e+L+ +lke
  29908.m006082  58 EKKRRLSMDQVKALEKNFEVENKLEPERKIRLAEELGLQPRQVAIWFQNRRARWKTKQLEREYVTLKTNYEALKLDYNNLERDNESLNLQLKE 150
                    69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-1950116IPR009057Homeodomain-like
PROSITE profilePS5007117.37854114IPR001356Homeobox domain
SMARTSM003896.3E-1857118IPR001356Homeobox domain
CDDcd000863.20E-1559115No hitNo description
PfamPF000462.9E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-1966113IPR009057Homeodomain-like
PRINTSPR000311.7E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.7E-594110IPR000047Helix-turn-helix motif
PfamPF021831.1E-13114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKRFSSPESF AALLSISSSK EEKTTQKSNQ VYSREFQAML DSLEEEDCTE ETTLTTTEKK  60
RRLSMDQVKA LEKNFEVENK LEPERKIRLA EELGLQPRQV AIWFQNRRAR WKTKQLEREY  120
VTLKTNYEAL KLDYNNLERD NESLNLQLKE LKAKMREGNA ESSQSVKEEC PVSESENNAS  180
VQSQSHEFSD NNNSNGSFKD NISDLSSHTL MNWIQLSDSR AILGNGYQVY QPHLVKLEEH  240
HSLFNIEESC NFLSVDQAPT LHWHFTEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513970.10.0homeobox-leucine zipper protein ATHB-6
TrEMBLB9RJQ10.0B9RJQ1_RICCO; Homeobox protein, putative
STRINGXP_002513970.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-52homeobox protein 16