PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006143
Common NameLOC8274078, RCOM_1031070
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 363aa    MW: 41355.1 Da    PI: 4.7834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006143genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.33e-2381382128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    ++G+rF+P deel+++yL +k+++ +l+    +k++d+y k ePw++      +   + + +yfF++ ++k+++++r  r++ +g+W+   + k+v
  29908.m006143   8 QVGVRFRPLDEELLMYYLSHKINNLSLPNPCPVKDCDLYgKNEPWEIWDyfggQNLMDVEFLYFFTQLKRKSSSSSRILRTVGTGTWHGDTSGKPV 103
                    78************************999677*****994569****742333211234455********************************** PP

            NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    l++ +++++gl k + +   + +++++  W+m ey+l
  29908.m006143 104 LDRkTKKVIGLIKKFHYK--KPKSAHNGGWLMREYSL 138
                    *98566779999998887..6677779********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-246149IPR003441NAC domain
PROSITE profilePS5100525.887153IPR003441NAC domain
PfamPF023653.8E-169138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTALETMQVG VRFRPLDEEL LMYYLSHKIN NLSLPNPCPV KDCDLYGKNE PWEIWDYFGG  60
QNLMDVEFLY FFTQLKRKSS SSSRILRTVG TGTWHGDTSG KPVLDRKTKK VIGLIKKFHY  120
KKPKSAHNGG WLMREYSLVG QSSDCVLCCL KMNKSGEKRN RLEAETKDYI IYNDDVANDV  180
SKRLKTQHHV ADEVRGNQRV EINNIEPQVI ESYCTSLRTL IEREPATTDQ LNDKNCTTSH  240
GSRVEESFSQ ECPAMTDDSY WANLRTEAGG VNDSELEISF EYLDWLINND DGVSEFLDLT  300
NDAGTVGDAK ISAGIKETRE EGQFVMPETT EQIKSQSLLS STVEERGSNF EECREDTGSR  360
KEE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513765.10.0protein BEARSKIN1
TrEMBLB9RJ460.0B9RJ46_RICCO; Transcription factor, putative
STRINGXP_002513765.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-13NAC family protein