PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29908.m006255

Common Name

LOC8268409, RCOM_1039380

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 246aa MW: 26786.1 Da PI: 8.9774

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29908.m006255	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46	9.7e-15	47	94	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++v+++k+L 29908.m006255 47 CKSHKEAERRRRQRINAHLSTLRTLLPST-----TKTDKASLLAEVVHHVKEL 94 689***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.707	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-12	47	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-14	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-13	48	97	No hit	No description
SuperFamily	SSF47459	7.2E-14	49	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-13	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.7E-5	137	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MLPAAGLDNY NQNVYLREPC LVNVMDAGES ILSSSSSRSE KKSTDPCKSH KEAERRRRQR 60 INAHLSTLRT LLPSTTKTDK ASLLAEVVHH VKELRKQATS QVARGGGETE LPDQQYWPFP 120 GESDEASLSY CDGPESKTMR VSVCCDDRPG LNQELADAIR SVHARAVRAE MMTVGGRTKS 180 VVVVQWGTGG GGRGGEEDVG VLRRAIKSVV ENRGAGSSGP GLLAHGNKRV RDYGDEFGIK 240 KNERVI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29908.m006255

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514035.1	0.0	transcription factor bHLH30
TrEMBL	B9RJW6	0.0	B9RJW6_RICCO; DNA binding protein, putative
STRING	XP_002514035.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11441	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	29908.m006255
Entrez Gene	8268409