PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29912.m005344

Common Name

RCOM_1048560

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 201aa MW: 21695.8 Da PI: 4.3865

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29912.m005344	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	14	46	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 rg+W++eEd l+++++ +G+g +W +++ g 29912.m005344 14 RGPWSPEEDATLKNYIHTHGTGgNWIGLPSKAG 46 89********************99966666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-9	5	40	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.17E-5	8	44	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.806	9	66	IPR017877	Myb-like domain
Pfam	PF00249	1.9E-6	14	46	IPR001005	SANT/Myb domain
CDD	cd00167	0.0017	16	38	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYIH THGTGGNWIG LPSKAGKIND AGKSGSNNRN 60 SPDRMADIFA SIPEDEAYNP ENSLLLNANS GTMTPLMAVR NYDHYYSNPQ GLILAESTLL 120 NLTEAPNFGH NIYNATSSSS SASSSYSQEV SSLSPSSALL PSDNAGSWSG DERLLVQEGE 180 INLLEFGLDQ SPYELLNYLT F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29912.m005344

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571655.1	4e-85	transcription factor RAX2
TrEMBL	B9RKD9	1e-144	B9RKD9_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002514183.1	1e-145	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	4e-24	MYB family protein

Link Out ? help Back to Top
Phytozome	29912.m005344